Stem-loop gmo-mir-193a

Accession

MI0036187

Description

Gadus morhua gmo-mir-193a precursor miRNA

Sequence

UGGGUCUUUGCGGGCAAGGUGAguccucauucauucAACUGGCCUACAAAGUCCCA
((((.(((((.((((.((.(((((........))))).)).)))).))))).))))

Structure

    U     C    A  G     ccu 
UGGG CUUUG GGGC AG UGAgu   c
|||| ||||| |||| || |||||    
ACCC GAAAC UCCG UC Acuua   a
    U     A    G  A     cuu 

Annotation confidence Not enough data

Genome context

HE570758.1: 401123-401178 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-193a

Mature gmo-miR-193a-5p

• Accession: MIMAT0044288
• Description: Gadus morhua gmo-miR-193a-5p mature miRNA
• Sequence: 1 - UGGGUCUUUGCGGGCAAGGUGA - 22
• Evidence: experimental ; Illumina [2]

Mature gmo-miR-193a-3p

• Accession: MIMAT0044289
• Description: Gadus morhua gmo-miR-193a-3p mature miRNA
• Sequence: 37 - AACUGGCCUACAAAGUCCCA - 56
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324