Stem-loop esi-MIR3469b

Accession

MI0036547

Description

Ectocarpus siliculosus esi-MIR3469b precursor miRNA

Sequence

cacucuccgccUCUGGGGUGGACAUGUGAACAccgucgccauccaacaguacgcaugucgaggaugacgacggugUUCACAUAUCCACCCCAGAGGcggagg
....((((((((((((((((((.(((((((((((((((.(((((.(((.......)))...))))).))))))))))))))).)))))))))))))))))).

Structure

cacu                  C               c     --a   gu 
    cuccgccUCUGGGGUGGA AUGUGAACAccgucg caucc   aca  a
    |||||||||||||||||| ||||||||||||||| |||||   |||  c
    gaggcGGAGACCCCACCU UACACUUguggcagc guagg   ugu  g
---g                  A               a     agc   ac 

Annotation confidence Low

Genome context

sctg_89: 313918-314019 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from esi-MIR3469b

Mature esi-miR3469b-5p

• Accession: MIMAT0044652
• Description: Ectocarpus siliculosus esi-miR3469b-5p mature miRNA
• Sequence: 12 - UCUGGGGUGGACAUGUGAACA - 32
• Evidence: experimental ; Illumina [1]

Mature esi-miR3469b-3p

• Accession: MIMAT0044653
• Description: Ectocarpus siliculosus esi-miR3469b-3p mature miRNA
• Sequence: 76 - UUCACAUAUCCACCCCAGAGG - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26101255
   microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus
   "Tarver JE, Cormier A, Pinzon N, Taylor RS, Carre W, Strittmatter M, Seitz H, Coelho SM, Cock JM"
   "Nucleic Acids Res (2015) 43:6384-6398