Stem-loop apl-mir-11588

Accession

MI0037138

Description

Anas platyrhynchos apl-mir-11588 precursor miRNA

Sequence

ACGGCAGUUCGAGUUCAGCGUGgauuccuuccagaucaUCCUGGAUUCGCUGCUGCUGUUU
((((((((.(((((((((..((((.....)))).......)))))))))..))))))))..

Structure

--        -U         -----CG    u 
  ACGGCAGU  CGAGUUCAG       UGga u
  ||||||||  |||||||||       |||| c
  UGUCGUCG  GCUUAGGUC       accu c
UU        UC         CUacuag    u 

Annotation confidence Not enough data

Genome context

scaffold555: 277-337 [+]

Mature apl-miR-11588-5p

• Accession: MIMAT0045236
• Description: Anas platyrhynchos apl-miR-11588-5p mature miRNA
• Sequence: 1 - ACGGCAGUUCGAGUUCAGCGUG - 22
• Evidence: experimental ; Illumina [1]

Mature apl-miR-11588-3p

• Accession: MIMAT0045237
• Description: Anas platyrhynchos apl-miR-11588-3p mature miRNA
• Sequence: 39 - UCCUGGAUUCGCUGCUGCUGUUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26369256
   Identification and profiling of microRNAs associated with white and black plumage pigmentation in the white and black feather bulbs of ducks by RNA sequencing
   "Apopo S, Liu H, Jing L, Du X, Xie S, Gong Y, Xu R, Li S"
   "Anim Genet (2015) 46:627-635