Stem-loop gmo-mir-18a-2

Accession

MI0037982

Description

Gadus morhua gmo-mir-18a-2 precursor miRNA

Literature search

1 open access papers mention gmo-mir-18a-2
(1 sentences)

Sequence

UAAGGUGCAUCUAGUGCAGAUagugaaauagacuagcaccuACUGCCCUAAGUGCCCCUUCU
.((((.((((.(((.((((.(((((...........)).))))))).))).)))).))))..

Structure

-U    U    C   U    A   -  aaau 
  AAGG GCAU UAG GCAG Uag ug    a
  |||| |||| ||| |||| ||| ||    g
  UUCC CGUG AUC CGUC Auc ac    a
UC    C    A   C    -   c  gauc 

Annotation confidence Not enough data

Genome context

HE566687.1: 993065-993126 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from gmo-mir-18a-2

Mature gmo-miR-18a-2-5p

• Accession: MIMAT0046031
• Description: Gadus morhua gmo-miR-18a-2-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAU - 21
• Evidence: experimental ; Illumina [1]

Mature gmo-miR-18a-3p

• Accession: MIMAT0046032
• Description: Gadus morhua gmo-miR-18a-3p mature miRNA
• Sequence: 42 - ACUGCCCUAAGUGCCCCUUCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324