miRBase entry: cpo-mir-27b

Stem-loop cpo-mir-27b

Accession

MI0038584

Description

Cavia porcellus cpo-mir-27b precursor miRNA

Literature search

1 open access papers mention cpo-mir-27b
(3 sentences)

Sequence

AGAGCUUAGCUGAUUGGUGAACAgugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))..

Structure

--           G    G       ugau   u 
  AGAGCUUAGCU AUUG UGAACAg    ugg  
  ||||||||||| |||| |||||||    ||| u
  UCUUGAAUCGG UGAC ACUUguu    gcc  
CG           -    -       --uc   u

Annotation confidence Not enough data

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Genome context

DS562897.1: 4055574-4055636 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-27b-5p

Accession	MIMAT0046892
Description	Cavia porcellus cpo-miR-27b-5p mature miRNA
Sequence	1 - AGAGCUUAGCUGAUUGGUGAACA - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-27b-3p

Accession	MIMAT0046893
Description	Cavia porcellus cpo-miR-27b-3p mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344