miRBase entry: cpo-mir-99a

Stem-loop cpo-mir-99a

Accession

MI0038610

Description

Cavia porcellus cpo-mir-99a precursor miRNA

Sequence

AACCCGUAGAUCCGAUCUUGUGguaaaguggacggcaCAAGCUCGCUUCUAUGGGUCUG
.(((((((((..(((.((((((.............)))))).)))..)))))))))...

Structure

--A         UC   U      guaaa 
   ACCCGUAGA  CGA CUUGUG     g
   |||||||||  ||| ||||||     u
   UGGGUAUCU  GCU GAACac     g
GUC         UC   C      ggcag

Annotation confidence Not enough data

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Genome context

DS562889.1: 6525110-6525168 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-99a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-99a-5p

Accession	MIMAT0046941
Description	Cavia porcellus cpo-miR-99a-5p mature miRNA
Sequence	1 - AACCCGUAGAUCCGAUCUUGUG - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-99a-3p

Accession	MIMAT0046942
Description	Cavia porcellus cpo-miR-99a-3p mature miRNA
Sequence	38 - CAAGCUCGCUUCUAUGGGUCUG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344