Stem-loop cpo-mir-223

Accession

MI0038715

Description

Cavia porcellus cpo-mir-223 precursor miRNA

Literature search

8 open access papers mention cpo-mir-223
(22 sentences)

Sequence

31521 reads, 8638.0 reads per million, 5 experiments

CGUGUAUUUGACAAGCUGAGUUGGacacuccaugugguagagUGUCAGUUUGUCAAAUACCCCAa
...((((((((((((((......(((((((.........))))))))))))))))))))).....

Structure

--CGU              GAGUUG       cau 
     GUAUUUGACAAGCU      Gacacuc   g
     ||||||||||||||      |||||||   u
     CAUAAACUGUUUGA      CUGUgag   g
aACCC              ------       aug 

Annotation confidence High

Genome context

DS562977.1: 2726066-2726130 [+]

Mature cpo-miR-223-5p

• Accession: MIMAT0047134
• Description: Cavia porcellus cpo-miR-223-5p mature miRNA
• Sequence: 1 - CGUGUAUUUGACAAGCUGAGUUGG - 24
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-223-3p

• Accession: MIMAT0047135
• Description: Cavia porcellus cpo-miR-223-3p mature miRNA
• Sequence: 43 - UGUCAGUUUGUCAAAUACCCCA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344