Stem-loop cpo-mir-500b

Accession

MI0038800

Description

Cavia porcellus cpo-mir-500b precursor miRNA

Sequence

UAAUCCUUGCUACCUGGGUGAGAGUgcuuugugaaugcAGUGCACCUGGGCAAGGGUUCUGU
.(((((((((...(((((((..(.(((.........))).).))))))))))))))))....

Structure

---U         UAC       AG G   uuu 
    AAUCCUUGC   CUGGGUG  A Ugc   g
    |||||||||   |||||||  | |||   u
    UUGGGAACG   GGUCCAC  U Acg   g
UGUC         ---       -G G   uaa 

Annotation confidence Not enough data

Genome context

DS562987.1: 3010278-3010339 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cpo-mir-500b

Mature cpo-miR-500b-5p

• Accession: MIMAT0047301
• Description: Cavia porcellus cpo-miR-500b-5p mature miRNA
• Sequence: 1 - UAAUCCUUGCUACCUGGGUGAGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-500b-3p

• Accession: MIMAT0047302
• Description: Cavia porcellus cpo-miR-500b-3p mature miRNA
• Sequence: 39 - AGUGCACCUGGGCAAGGGUUCUGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344