Stem-loop cpo-mir-506

Accession

MI0038806

Description

Cavia porcellus cpo-mir-506 precursor miRNA

Sequence

295 reads, 3181.0 reads per million, 5 experiments

UACUUGGAAAGGUGCCAUUCAAUaaauuacauuaugAAGUGCGCCUUCCUGAGUAGA
(((((((.(((((((..((((.(((......)))))))..))))))).)))))))..

Structure

--       A       CA    A   au 
  UACUUGG AAGGUGC  UUCA Uaa  u
  ||||||| |||||||  |||| |||   
  AUGAGUC UUCCGCG  AAgu auu  a
AG       C       UG    -   ac 

Annotation confidence Not enough data

Genome context

DS562939.1: 2699627-2699683 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-506

Mature cpo-miR-506-5p

• Accession: MIMAT0047313
• Description: Cavia porcellus cpo-miR-506-5p mature miRNA
• Sequence: 1 - UACUUGGAAAGGUGCCAUUCAAU - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-506-3p

• Accession: MIMAT0047314
• Description: Cavia porcellus cpo-miR-506-3p mature miRNA
• Sequence: 37 - AAGUGCGCCUUCCUGAGUAGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344