Stem-loop cpo-mir-12075

Accession

MI0038875

Description

Cavia porcellus cpo-mir-12075 precursor miRNA

Sequence

13023 reads, 28225.0 reads per million, 6 experiments

uuuauuacaCAACUCCAGGAUUCGUCGAUCAUGuguaauuaaguuugAUCGGCGUCUCCUGAAGUGAAGUaauaca
..((((((...(((.(((((..(((((((((..............)))))))))..))))).)))...))))))..

Structure

uu      aCA   C     UU         UGugua 
  uauuac   ACU CAGGA  CGUCGAUCA      a
  ||||||   ||| |||||  |||||||||       
  auaaUG   UGA GUCCU  GCGGCUAgu      u
ac      AAG   A     CU         uugaau 

Annotation confidence High

Genome context

DS562939.1: 2702877-2702952 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-12075

Mature cpo-miR-12075-5p

• Accession: MIMAT0047451
• Description: Cavia porcellus cpo-miR-12075-5p mature miRNA
• Sequence: 10 - CAACUCCAGGAUUCGUCGAUCAUG - 33
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-12075-3p

• Accession: MIMAT0047452
• Description: Cavia porcellus cpo-miR-12075-3p mature miRNA
• Sequence: 48 - AUCGGCGUCUCCUGAAGUGAAGU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344