miRBase entry: ocu-mir-99a

Stem-loop ocu-mir-99a

Accession

MI0039264

Description

Oryctolagus cuniculus ocu-mir-99a precursor miRNA

Sequence

AACCCGUAGAUCCGAUCUUGUGgugaaguggaccgcaCAAGCUCGCUUCUAUGGGUCUG
.(((((((((..(((.((((((.((........)))))))).)))..)))))))))...

Structure

--A         UC   U      g  aag 
   ACCCGUAGA  CGA CUUGUG ug   u
   |||||||||  ||| |||||| ||    
   UGGGUAUCU  GCU GAACac gc   g
GUC         UC   C      -  cag

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM000803.1: 144547521-144547579 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-99a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-99a-5p

Accession	MIMAT0048182
Description	Oryctolagus cuniculus ocu-miR-99a-5p mature miRNA
Sequence	1 - AACCCGUAGAUCCGAUCUUGUG - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-99a-3p

Accession	MIMAT0048183
Description	Oryctolagus cuniculus ocu-miR-99a-3p mature miRNA
Sequence	38 - CAAGCUCGCUUCUAUGGGUCUG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344