Stem-loop dre-mir-129-4

Accession

MI0039508

Description

Danio rerio dre-mir-129-4 precursor miRNA

Literature search

3 open access papers mention dre-mir-129-4
(12 sentences)

Sequence

392 reads, 28 reads per million, 8 experiments

gucuuucgcgaauCUUUUUGCGGUCUGGGCUUGCUguucauaaguaucuagcugggAAGCCCUUACCCCAAAAAGCAUuugcggaaggc
((((((((((((((((((((.(((..((((((.(((((...........))).)).))))))..))).))))))).)))))))))))))

Structure

             -       C   CU      G  -   caua 
gucuuucgcgaau CUUUUUG GGU  GGGCUU CU guu    a
||||||||||||| ||||||| |||  |||||| || |||    g
cggaaggcguuUA GAAAAAC CCA  CCCGAA gg cga    u
             C       C   UU      g  u   ucua 

Annotation confidence High

Genome context

chr25: 30176471-30176559 [+]

Mature dre-miR-129-3p

• Accession: MIMAT0003158
• Description: Danio rerio dre-miR-129-3p mature miRNA
• Sequence: 57 - AAGCCCUUACCCCAAAAAGCAU - 78
• Evidence: experimental ; array [2]

Mature dre-miR-129-5p

• Accession: MIMAT0001825
• Description: Danio rerio dre-miR-129-5p mature miRNA
• Sequence: 14 - CUUUUUGCGGUCUGGGCUUGCU - 35
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242