Stem-loop dre-mir-181a-4

Accession

MI0039511

Description

Danio rerio dre-mir-181a-4 precursor miRNA

Literature search

18 open access papers mention dre-mir-181a-4
(68 sentences)

Sequence

775069 reads, 50804 reads per million, 11 experiments

ggugcauucugggAACAUUCAACGCUGUCGGUGAGUuuggaugcauaauaaACCAUCGACCGUUGGCUGUGCCcugagauuacc
((((..(((.(((.(((.((((((..(((((((.(((((.........)))))))))))))))))).))).))).)))..))))

Structure

    ca   u   A   U      CU       A     gau 
ggug  uuc ggg ACA UCAACG  GUCGGUG GUuug   g
||||  ||| ||| ||| ||||||  ||||||| |||||   c
ccau  gag cCC UGU GGUUGC  CAGCUAC CAaau   a
    ua   u   G   C      --       -     aau 

Annotation confidence Not enough data

Genome context

chr21: 8221805-8221888 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181a-4

Mature dre-miR-181a-5p

• Accession: MIMAT0001623
• Description: Danio rerio dre-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGU - 36
• Evidence: not_experimental

Mature dre-miR-181a-4-3p

• Accession: MIMAT0048653
• Description: Danio rerio dre-miR-181a-4-3p mature miRNA
• Sequence: 52 - ACCAUCGACCGUUGGCUGUGCC - 73
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242