Stem-loop dre-mir-181b-3

Accession

MI0039514

Description

Danio rerio dre-mir-181b-3 precursor miRNA

Literature search

12 open access papers mention dre-mir-181b-3
(42 sentences)

Sequence

70729 reads, 4550 reads per million, 11 experiments

aaaggucacaaucAACAUUCAUUGCUGUCGGUGGGuuggauuguaaaagaaagCUCACUGAACAAUGAAUGCAAcugugucccag
...((.((((.....(((((((((...((((((((((...((....))...)))))))))).)))))))))....)))).))...

Structure

aaa  u    aucAA         CUG          gga  g 
   gg caca     CAUUCAUUG   UCGGUGGGuu   uu u
   || ||||     |||||||||   ||||||||||   ||  
   cc gugu     GUAAGUAAC   AGUCACUCga   aa a
gac  u    -cAAC         --A          aag  a 

Annotation confidence High

Genome context

chr22: 22825793-22825877 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181b-3

Mature dre-miR-181b-5p

• Accession: MIMAT0001270
• Description: Danio rerio dre-miR-181b-5p mature miRNA
• Sequence: 14 - AACAUUCAUUGCUGUCGGUGGG - 35
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-181b-3-3p

• Accession: MIMAT0048656
• Description: Danio rerio dre-miR-181b-3-3p mature miRNA
• Sequence: 54 - CUCACUGAACAAUGAAUGCAA - 74
• Evidence: not_experimental

References

1. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242