Stem-loop aof-MIR12141

Accession

MI0040518

Description

Asparagus officinalis aof-MIR12141 precursor miRNA

Sequence

cucaauguguCACCUUAACUCGUACCUGUUAGcuuuaucacauugguguauauuucaucggaagaaugcagaacaaguuguucaaacaugggauaagcaauuccauagugcccaaaaagagcaaaaaguaccacuucuauaucuugccaaugacaucuugcaaaacagcaagcggacaggaucagaguuuguuggugaguuuugga
.((((....(((((..(((((...((((((.(((......(((((((((((.((((....)))).)))).(((((...)))))..(((((((((.....))))))).)).......((((.....((((...)))).....)))))))))))......(((......)))))).))))))....)))))....)))))...)))).

Structure

c    ugug     --UU     -GUA      A   ------------uuauca       guauauuucaucggaagaaugcagaacaaguuguucaa  -       a 
 ucaa    uCACC    AACUC    CCUGUU Gcu                  cauuggu                                      ac augggau a
 ||||    |||||    |||||    |||||| |||                  |||||||                                      || ||||||| g
 gguu    agugg    uugag    ggacag cga                  guaaccg                                      ug uaccuua c
a    -uug     uugu     acua      g   acgacaaaacguucuaca       --uucuauaucuucaccaugaaaaacgagaaaaacccg  a       a 

Annotation confidence Not enough data

Genome context

chr4: 11914110-11914315 [+]

Mature aof-miR12141

• Accession: MIMAT0049724
• Description: Asparagus officinalis aof-miR12141 mature miRNA
• Sequence: 11 - CACCUUAACUCGUACCUGUUAG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279