Stem-loop aof-MIR12157

Accession

MI0040534

Description

Asparagus officinalis aof-MIR12157 precursor miRNA

Sequence

agguaaauacUAUUAGAGUUAGGUGAUUACUauuaaggauagguguuacugcggcuagguagguggggguagaugugaagcugcuccaaaaaaacuaguucaauuuggguuugacuuaugccaaacuaaaaacaagauauuggaccagacuuguagcacacgaaguucugugucguugcua
.........(((((..((((.((((((..(((((...)))))..))))))..)))).)))))...(((((((........))))))).......((.((((((((((((((((........)))))).....)))...))))))).))....((((((((((......))))).)))))..

Structure

--------------------------------------------------------------------------------------------------------------agguaaaua     AG    -A      UA     a 
                                                                                                                       cUAUU  AGUU  GGUGAU  CUauu  
                                                                                                                       |||||  ||||  ||||||  ||||| a
                                                                                                                       gaugg  ucgg  ucauug  gauag  
aucguugcugugucuugaagcacacgauguucagaccagguuauagaacaaaaaucaaaccguauucaguuuggguuuaacuugaucaaaaaaaccucgucgaaguguagaugggggug     -a    cg      ug     g 

Annotation confidence Not enough data

Genome context

chr5: 101638107-101638287 [+]

Mature aof-miR12157

• Accession: MIMAT0049740
• Description: Asparagus officinalis aof-miR12157 mature miRNA
• Sequence: 11 - UAUUAGAGUUAGGUGAUUACU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279