Stem-loop aof-MIR396a

Accession

MI0040597

Description

Asparagus officinalis aof-MIR396a precursor miRNA

Literature search

1 open access papers mention aof-MIR396a
(7 sentences)

Sequence

129079 reads, 40107.0 reads per million, 10 experiments

ggaagucaagauuauggauauguucUUCCACGGCUUUCUUGAACUGuguacucaauucuuauuucuuuucauuuuucucuuuuugaauaguuuggaaaaagaaaaaaaaauaggauaaaaaaaaggaugacggaaaaaagaaaagaauaauuugggaaaagauggagaaggucauaGUUCAAGAAAGACGUGGGAAAacauggcaugucuuuuugucucguc
(((....(((((.(((..((((((.(((((((.(((((((((((((((.(((...(((((((((.((((((..((..(((((((......((((....................................)))).....)))))))..))..)))))).)))).))))))))))))))))))))))).))))))).)))))).))))))))....)))....

Structure

----   aguc     u   ga      c       G               u   caa     -    c      uu  uc       gaauag    gaaaaagaaaaaaaaau 
    gga    aagau aug  uauguu UUCCACG CUUUCUUGAACUGug acu   uucuu auuu uuuuca  uu  ucuuuuu      uuug                 a
    |||    ||||| |||  |||||| ||||||| ||||||||||||||| |||   ||||| |||| ||||||  ||  |||||||      ||||                  
    ucu    uucug uac  guacaA AGGGUGC GAAAGAACUUGauac ugg   aagag uaga aagggu  aa  agaaaag      aggc                 g
cugc   guuu     -   -g      A       A               -   ---     g    a      uu  ua       -aaaaa    aguaggaaaaaaaauag 

Annotation confidence High

Genome context

chr10: 6303127-6303348 [+]

Mature aof-miR396a-5p

• Accession: MIMAT0049803
• Description: Asparagus officinalis aof-miR396a-5p mature miRNA
• Sequence: 26 - UUCCACGGCUUUCUUGAACUG - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR396a-3p

• Accession: MIMAT0060742
• Description: Asparagus officinalis aof-miR396a-3p mature miRNA
• Sequence: 177 - GUUCAAGAAAGACGUGGGAAA - 197
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279