Stem-loop aof-MIR482a

Accession

MI0040606

Description

Asparagus officinalis aof-MIR482a precursor miRNA

Literature search

1 open access papers mention aof-MIR482a
(3 sentences)

Sequence

364286 reads, 91439.0 reads per million, 10 experiments

gggagucggauuguuaggaguuaucGGAUUGGGGUUGGAUUGGAAAAAucuuuuuaaugccuaaaauuauUUUCCAAUGCCUCCCAUUCCGGugauuucuaaccgucuauuccucuc
((((((.((((.((((((((((((((((.(((((..(((((((((((....(((((.....)))))...))))))))).))))))).)))))))))))))))).))))))))))...

Structure

---      c    u                U     UU  -         Aucu     a 
   gggagu ggau guuaggaguuaucGGA UGGGG  GG AUUGGAAAA    uuuua u
   |||||| |||| |||||||||||||||| |||||  || |||||||||    ||||| g
   uccuua ucug caaucuuuaguGGCCU ACCCU  CC UAACCUUUu    aaaau c
cuc      -    c                U     --  G         -auu     c 

Annotation confidence High

Genome context

chr1: 123326639-123326755 [+]

Mature aof-miR482a-5p

• Accession: MIMAT0060749
• Description: Asparagus officinalis aof-miR482a-5p mature miRNA
• Sequence: 26 - GGAUUGGGGUUGGAUUGGAAAAA - 48
• Evidence: experimental ; unknown

Mature aof-miR482a-3p

• Accession: MIMAT0049812
• Description: Asparagus officinalis aof-miR482a-3p mature miRNA
• Sequence: 71 - UUUCCAAUGCCUCCCAUUCCGG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279