Stem-loop smc-mir-12457

Accession

MI0041065

Description

Symbiodinium microadriaticum smc-mir-12457 precursor miRNA

Sequence

CUUUGUAUCCCGGAUCCUGAUAuuccucuucgcaaacgaugagccaucaguggcgaagaggaauaUCAAGACCCGGGAUAUAUAUGU
...((((((((((.((.((((((((((((((((..((((((...)))).)).)))))))))))))))).)).)))))))))).....

Structure

--CUU          A  C                aa  -    a 
     UGUAUCCCGG UC UGAUAuuccucuucgc  ac gaug  
     |||||||||| || ||||||||||||||||  || |||| g
     AUAUAGGGCC AG ACUauaaggagaagcg  ug cuac  
UGUAU          C  A                -g  a    c 

Annotation confidence Not enough data

Genome context

LSRX01000428.1: 127542-127628 [-]

Mature smc-miR-12457-5p

• Accession: MIMAT0050478
• Description: Symbiodinium microadriaticum smc-miR-12457-5p mature miRNA
• Sequence: 1 - CUUUGUAUCCCGGAUCCUGAUA - 22
• Evidence: experimental ; Illumina [1]

Mature smc-miR-12457-3p

• Accession: MIMAT0050479
• Description: Symbiodinium microadriaticum smc-miR-12457-3p mature miRNA
• Sequence: 66 - UCAAGACCCGGGAUAUAUAUGU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119094
   Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
   "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
   "BMC Genomics (2013) 14:704