Deep sequencing reads for stem-loop sequence MI0003760

Stem-loop ID hsa-mir-671
Reads 
                            hsa-miR-671-5p                        hsa-miR-671-3p                                        Count     RPM (mean number of reads per million)
............................AGGAAGCCCUGGAGGGGCUGGAGG..................................................................  105       2.87
............................AGGAAGCCCUGGAGGGGCUGGAG...................................................................  56        6.23
............................AGGAAGCCCUGGAGGGGCUGGAGGU.................................................................  48        3.9
............................AGGAAGCCCUGGAGGGGCUGGA....................................................................  21        0.473
............................AGGAAGCCCUGGAGGGGCUGG.....................................................................  8         0.171
............................AGGAAGCCCUGGAGGGG.........................................................................  3         0.0755
..................................CCCUGGAGGGGCUGGAG...................................................................  2         7.34
..................................................................CUCCGGUUCUCAGGGCUCCACC..............................  10        0.433
...................................................................UCCGGUUCUCAGGGCUCCACC..............................  34        0.842
...................................................................UCCGGUUCUCAGGGCUCCAC...............................  6         0.372
...................................................................UCCGGUUCUCAGGGCUCCACCU.............................  2         0.0323
...................................................................UCCGGUUCUCAGGGCUCCA................................  2         0.0503
GCAGGUGAACUGGCAGGCCAGGAAGAGGAGGAAGCCCUGGAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAGGGCUCCACCUCUUUCGGGCCGUAGAGCCAGGGCUGGUGC
(((...(..(((((.((((.((((((((.(((.((((((..(((((((((((.(((....)))..)))))))))))))))))))).)))))))).)))).....)))))..)...))) (-68.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000001 2embryonic stem cell GEO : GSM541796 [ Bar M et al.]
ER0000000002 11embryonic stem cell GEO : GSM541797 [ Bar M et al.]
ER0000000103 6melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000104 2melanocyte GEO : GSM458536 [ Stark MS et al.]
ER0000000105 14 GEO : GSM458537 cell line: primary giant congental nevus [ Stark MS et al.]
ER0000000107 5melanoma GEO : GSM458539 cell line: secondary mucosal melanoma [ Stark MS et al.]
ER0000000108 234melanoma GEO : GSM458540 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000109 5melanoma GEO : GSM458541 cell line: primary uveal melanoma [ Stark MS et al.]
ER0000000110 58melanoma GEO : GSM458542 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000111 103melanoma GEO : GSM458543 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000112 128melanoma GEO : GSM458544 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000113 19melanoma GEO : GSM458545 cell line: secondary cutaneous melanoma from a chronically sun-damaged body site [ Stark MS et al.]
ER0000000114 21melanoma GEO : GSM458546 cell line: secondary cutaneous melanoma [ Stark MS et al.]
ER0000000135 1 GEO : GSM532871 normal cervix [ Witten D et al.]
ER0000000138 5squamous cell GEO : GSM532874 [ Witten D et al.]
ER0000000140 1squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000141 1 GEO : GSM532877 normal cervix [ Witten D et al.]
ER0000000147 2 GEO : GSM532883 normal cervix [ Witten D et al.]
ER0000000150 7squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000154 1squamous cell GEO : GSM532890 [ Witten D et al.]
ER0000000156 2squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000157 12 GEO : GSM532893 normal cervix [ Witten D et al.]
ER0000000159 1 GEO : GSM532895 normal cervix [ Witten D et al.]
ER0000000161 4 GEO : GSM532897 normal cervix [ Witten D et al.]
ER0000000164 4squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000165 3 GEO : GSM532901 normal cervix [ Witten D et al.]
ER0000000171 2 GEO : GSM532907 normal cervix [ Witten D et al.]
ER0000000174 4squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000178 2squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000181 4 GEO : GSM532917 normal cervix [ Witten D et al.]
ER0000000183 1whole body GEO : GSM532919 normal cervix [ Witten D et al.]
ER0000000186 3squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000188 1squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000263 3 GEO : GSM337571 antibody: anti-Ago2 11A9
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).