miRBase entry: ath-MIR162b

Stem-loop ath-MIR162b


Accession
MI0000195
Description
Arabidopsis thaliana ath-MIR162b precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
17 open access papers mention ath-MIR162b
(45 sentences)

Sequence

gagugaagucgcUGGAGGCAGCGGUUCAUCGAUCaauuccugugaauauuuauuuuuguuuacaaaagcaagaaucgaUCGAUAAACCUCUGCAUCCAGcgcugcuugcuc
((((.(((((((((((.((((.((((.(((((((.((((.((((((((........)))))))).......)))).))))))).)))).)))).)))))))..))))))))

Structure
    g    --       G    C    C       a    ------c        uuu 
gagu aagu  cgcUGGA GCAG GGUU AUCGAUC auuc       ugugaaua   a
|||| ||||  ||||||| |||| |||| ||||||| ||||       ||||||||    
cucg uucg  gcGACCU CGUC CCAA UAGCUag uaag       acauuugu   u
    -    uc       A    U    A       c    aacgaaa        uuu 


Annotation confidence Not enough data
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Genome context
chr5: 7740598-7740708 [-]

Database links

Mature ath-miR162b-3p

Accession MIMAT0000183
Description Arabidopsis thaliana ath-miR162b-3p mature miRNA
Sequence 79 - UCGAUAAACCUCUGCAUCCAG - 99
Evidence experimental
cloned [1,3], Northern [1], 3'RACE [3], 5'RACE [3], 454 [4-5], MPSS [4]

Mature ath-miR162b-5p

Accession MIMAT0031877
Description Arabidopsis thaliana ath-miR162b-5p mature miRNA
Sequence 13 - UGGAGGCAGCGGUUCAUCGAUC - 34
Evidence not_experimental

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626

  2. PubMed ID: 12202040
    Prediction of plant microRNA targets
    "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
    "Cell (2002) 110:513-520

  3. PubMed ID: 16040653
    Expression of Arabidopsis MIRNA genes
    "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
    "Plant Physiol (2005) 138:2145-2154

  4. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  5. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425