Stem-loop mmu-mir-296

Accession

MI0000394

Symbol

MGI: Mir296

Description

Mus musculus mmu-mir-296 precursor miRNA mir-296

Gene
family

RF00733; mir-296

Literature search

37 open access papers mention mmu-mir-296
(143 sentences)

Sequence

58164 reads, 336 reads per million, 101 experiments

gggccuuucuggAGGGCCCCCCCUCAAUCCUGUugugcucgcuucaGAGGGUUGGGUGGAGGCUCUCCugaaggugucc
(((((((((.((((((((.((.(((((((((.(((.........)))))))))))).)).)))))))).))))).))))

Structure

    -     u        C  C         G   ugc 
gggc cuuuc ggAGGGCC CC CUCAAUCCU Uug   u
|||| ||||| |||||||| || ||||||||| |||   c
ccug ggaag CCUCUCGG GG GGGUUGGGA Gac   g
    u     u        A  U         -   uuc 

Annotation confidence Medium

Genome context

chr2: 174267047-174267125 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-296

Mature mmu-miR-296-5p

• Accession: MIMAT0000374
• Description: Mus musculus mmu-miR-296-5p mature miRNA
• Sequence: 13 - AGGGCCCCCCCUCAAUCCUGU - 33
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3-4]

Mature mmu-miR-296-3p

• Accession: MIMAT0004576
• Description: Mus musculus mmu-miR-296-3p mature miRNA
• Sequence: 47 - GAGGGUUGGGUGGAGGCUCUCC - 68
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009