Accession
MI0000654
Description
Oryza sativa
osa-MIR156b precursor miRNA
Gene family
MIPF0000008;
MIR156
Literature search
120 open access papers mention osa-MIR156b
(671 sentences)
(671 sentences)
Sequence
373816
reads,
258339
reads per million, 2 experiments
uugucuugagaggggaagagaucucuauggguuuuggaggucUGACAGAAGAGAGUGAGCACacacggugcuuucuuagcaugcaagagccaugcugggagcugugcguGCUCACUCUCUAUCUGUCAGCcguucaccaugcccaauaugauuaaucuccuucucucaguugacag
.((((((((((((((.(((((((....(((((..((((((.(((((((((((((((((((((.((((((....(((((((((((....).)))))))))))))))).))))))))))))).)))))))))).))))....)))))....))))..))).))))))))))..)))).
.((((((((((((((.(((((((....(((((..((((((.(((((((((((((((((((((.((((((....(((((((((((....).)))))))))))))))).))))))))))))).)))))))))).))))....)))))....))))..))).))))))))))..)))).
Structure
u -- a -- ucua --uu - u - a gcuu - a uguc uugagagggg aga gauc ugggu ugga gg cUGACAGA AGAGAGUGAGCAC cacggu ucuuagcaug c a |||| |||||||||| ||| |||| ||||| |||| || |||||||| ||||||||||||| |||||| |||||||||| | acag gacucucuuc ucu uuag acccg acuu cC GACUGUCU UCUCUCACUCGug gugucg agggucguac g g g uu c aa uaua uacc g - A c ---- c a
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr1: 4666341-4666516 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR156b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR156b-5p
| Accession | MIMAT0000619 |
| Description | Oryza sativa osa-miR156b-5p mature miRNA |
| Sequence | 43 - UGACAGAAGAGAGUGAGCAC - 62 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR156b-3p
| Accession | MIMAT0022845 |
| Description | Oryza sativa osa-miR156b-3p mature miRNA |
| Sequence | 110 - GCUCACUCUCUAUCUGUCAGC - 130 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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