Stem-loop sequence osa-MIR156h

Accession

MI0000660 (change log)

Description

Oryza sativa miR156h stem-loop

Gene family

MIPF0000008; MIR156

Literature search

120 open access papers mention osa-MIR156h
(651 sentences)

Stem-loop

              -    -        a       c  a   caucgaucuaucaaucuucccuucgacaggauagcuagauagaaagaaagagag 
5' aguugacagaa gaga gugagcac cagcggc ag cug                                                      g
   ||||||||||| |||| |||||||| ||||||| || |||                                                       
3' ucgacugucuu cucu cacucgug gucgccg uc gac                                                      c
              u    u        c       -  -   auaguaguaguaguaaaguagagagagagagagagagaagguaccggcggcugc 

Deep sequencing

568814 reads, 3.91e+05 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr8: 21491232-21491417 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR156h

• osa-MIR5157b: Chr8: 21489165-21489257 [-]
• osa-MIR156h: Chr8: 21491232-21491417 [+]

Database links

• miRBase Tracker:MI0000660

Mature sequence osa-miR156h-5p

• Accession: MIMAT0031156
• Sequence: 4 - ugacagaagagagugagcac - 23
• Deep sequencing: 568662 reads, 2 experiments
• Evidence: by similarity; MI0000178
• Database links:
  • RNAcentral:URS000020F5A7_39947

Mature sequence osa-miR156h-3p

• Accession: MIMAT0031157
• Sequence: 164 - gcucacuucucuuucugucagc - 185
• Deep sequencing: 118 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000019CB0D_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).