Stem-loop sequence osa-MIR160a

Accession

MI0000663 (change log)

Description

Oryza sativa miR160a stem-loop

Gene family

MIPF0000032; MIR160

Literature search

63 open access papers mention osa-MIR160a
(199 sentences)

Stem-loop

         c       c          a  u    ac     caug 
5' gugugc uggcucc uguaugccac ca guag  caacc    g
   |||||| ||||||| |||||||||| || ||||  |||||     
3' cguacg accgagg acgugcggug gu cauc  guugg    u
         a       a          g  -    -c     ucug 

Deep sequencing

734 reads, 350 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MSU7): Chr2: 3511585-3511672 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000663

Mature sequence osa-miR160a-5p

• Accession: MIMAT0000628
• Previous IDs: osa-miR160a
• Sequence: 4 - ugccuggcucccuguaugcca - 24
• Deep sequencing: 519 reads, 2 experiments
• Evidence: by similarity; MI0000192
• Database links:
  • RNAcentral:URS000055B49A_39947

Mature sequence osa-miR160a-3p

• Accession: MIMAT0022851
• Sequence: 67 - gcgugcaaggagccaagcaug - 87
• Deep sequencing: 215 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000546A73_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).