Stem-loop osa-MIR160a

Accession

MI0000663

Description

Oryza sativa osa-MIR160a precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

63 open access papers mention osa-MIR160a
(204 sentences)

Sequence

554 reads, 392 reads per million, 2 experiments

gugUGCCUGGCUCCCUGUAUGCCAcacauguagaccaacccauggugucugguugccuacugggugGCGUGCAAGGAGCCAAGCAUGc
((((((.(((((((.((((((((((.(..((((..(((((..........))))).))))..))))))))))).))))))).))))))

Structure

      C       C          a au    ac     caug 
gugUGC UGGCUCC UGUAUGCCAc c  guag  caacc    g
|||||| ||||||| |||||||||| |  ||||  |||||     
cGUACG ACCGAGG ACGUGCGgug g  cauc  guugg    u
      A       A          - gu    -c     ucug 

Annotation confidence High

Genome context

Chr2: 3511585-3511672 [-]

Mature osa-miR160a-5p

• Accession: MIMAT0000628
• Description: Oryza sativa osa-miR160a-5p mature miRNA
• Sequence: 4 - UGCCUGGCUCCCUGUAUGCCA - 24
• Evidence: not_experimental

Mature osa-miR160a-3p

• Accession: MIMAT0022851
• Description: Oryza sativa osa-miR160a-3p mature miRNA
• Sequence: 67 - GCGUGCAAGGAGCCAAGCAUG - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176