Stem-loop sequence osa-MIR160b

Accession

MI0000664 (change log)

Description

Oryza sativa miR160b stem-loop

Gene family

MIPF0000032; MIR160

Literature search

57 open access papers mention osa-MIR160b
(186 sentences)

Stem-loop

        --uu  uuuu    --   uugaga      c       c              gu   cca     ugg 
5' aaggu    gg    gauc  ggc      gcgugc uggcucc uguaugccacucau  agc   aucca   u
   |||||    ||    ||||  |||      |||||| ||||||| ||||||||||||||  |||   |||||   g
3' uuccg    uc    cuag  ccg      cguacg accgagg acgugcggugggug  ucg   uaggu   u
        ucuu  -ucu    ua   ----ug      a       a              --   ---     uug 

Deep sequencing

734 reads, 350 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MSU7): Chr6: 28081020-28081158 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000664

Mature sequence osa-miR160b-5p

• Accession: MIMAT0000629
• Previous IDs: osa-miR160b
• Sequence: 30 - ugccuggcucccuguaugcca - 50
• Deep sequencing: 519 reads, 2 experiments
• Evidence: by similarity; MI0000192
• Database links:
  • RNAcentral:URS000055B49A_39947

Mature sequence osa-miR160b-3p

• Accession: MIMAT0022852
• Sequence: 93 - gcgugcaaggagccaagcaug - 113
• Deep sequencing: 215 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000546A73_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).