Stem-loop sequence osa-MIR160c

Accession

MI0000665 (change log)

Description

Oryza sativa miR160c stem-loop

Gene family

MIPF0000032; MIR160

Literature search

57 open access papers mention osa-MIR160c
(182 sentences)

Stem-loop

            c       c         cu    -   a     aaa   c 
5' ggaaugugc uggcucc uguaugcca  cauc uag gcaac   cuu u
   ||||||||| ||||||| |||||||||  |||| ||| |||||   |||  
3' ccuuauacg accgagg acgugcggu  guag auc cguug   gag g
            a       c         ag    u   -     -ga   c 

Deep sequencing

730 reads, 350 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MSU7): Chr8: 1707568-1707666 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000665

Mature sequence osa-miR160c-5p

• Accession: MIMAT0000630
• Previous IDs: osa-miR160c
• Sequence: 7 - ugccuggcucccuguaugcca - 27
• Deep sequencing: 521 reads, 2 experiments
• Evidence: by similarity; MI0000190
• Database links:
  • RNAcentral:URS000055B49A_39947

Mature sequence osa-miR160c-3p

• Accession: MIMAT0022853
• Sequence: 75 - gcgugcacggagccaagcaua - 95
• Deep sequencing: 201 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000006B8E_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).