Stem-loop osa-MIR160c

Accession

MI0000665

Description

Oryza sativa osa-MIR160c precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

57 open access papers mention osa-MIR160c
(187 sentences)

Sequence

450 reads, 321 reads per million, 2 experiments

ggaaugUGCCUGGCUCCCUGUAUGCCAcucaucuagagcaacaaacuucugcgagagguugccuaugauggaugGCGUGCACGGAGCCAAGCAUAuucc
(((((((((.(((((((.(((((((((.((((((((.(((((...(((....)))..)))))))).))))).))))))))).))))))).)))))))))

Structure

         C       C         c     -   a     aaa   c 
ggaaugUGC UGGCUCC UGUAUGCCA ucauc uag gcaac   cuu u
||||||||| ||||||| ||||||||| ||||| ||| |||||   |||  
ccuuAUACG ACCGAGG ACGUGCGgu gguag auc cguug   gag g
         A       C         a     u   -     -ga   c 

Annotation confidence High

Genome context

Chr8: 1707568-1707666 [+]

Mature osa-miR160c-5p

• Accession: MIMAT0000630
• Description: Oryza sativa osa-miR160c-5p mature miRNA
• Sequence: 7 - UGCCUGGCUCCCUGUAUGCCA - 27
• Evidence: not_experimental

Mature osa-miR160c-3p

• Accession: MIMAT0022853
• Description: Oryza sativa osa-miR160c-3p mature miRNA
• Sequence: 75 - GCGUGCACGGAGCCAAGCAUA - 95
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176