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miRBase |
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Stem-loop sequence osa-MIR160d |
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Accession | MI0000666 (change log) | ||||
Description | Oryza sativa miR160d stem-loop | ||||
Gene family | MIPF0000032; MIR160 | ||||
Literature search |
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57 open access papers mention osa-MIR160d | ||||
Stem-loop |
gg a c c cu - cu ucagu - c --- c 5' gg uaugc uggcucc uguaugcca cgc guag gccaaac ugaa acaa ugccu ucuc c || ||||| ||||||| ||||||||| ||| |||| ||||||| |||| |||| ||||| |||| g 3' cc guacg accgagg gcgugcggu gcg cauc cgguuug gcuu uguu acgga agag g -- a a a ag u -u --cau g - cuu c |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence osa-miR160d-5p |
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Accession | MIMAT0000631 |
Previous IDs | osa-miR160d |
Sequence |
8 - ugccuggcucccuguaugcca - 28 |
Deep sequencing | 519 reads, 2 experiments |
Evidence | by similarity; MI0000190 |
Database links |
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Mature sequence osa-miR160d-3p |
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Accession | MIMAT0022854 |
Sequence |
119 - gcgugcgaggagccaagcaug - 139 |
Deep sequencing | 166 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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References |
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1 |
PMID:12101121
"MicroRNAs in plants"
Genes Dev. 16:1616-1626(2002).
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2 |
PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"
PLoS Pathog. 7:e1002176(2011).
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