Stem-loop sequence osa-MIR160d

Accession

MI0000666 (change log)

Description

Oryza sativa miR160d stem-loop

Gene family

MIPF0000032; MIR160

Literature search

57 open access papers mention osa-MIR160d
(184 sentences)

Stem-loop

   gg  a     c       c         cu   -    cu       ucagu    -    c     ---    c 
5'   gg uaugc uggcucc uguaugcca  cgc guag  gccaaac     ugaa acaa ugccu   ucuc c
     || ||||| ||||||| |||||||||  ||| ||||  |||||||     |||| |||| |||||   |||| g
3'   cc guacg accgagg gcgugcggu  gcg cauc  cgguuug     gcuu uguu acgga   agag g
   --  a     a       a         ag   u    -u       --cau    g    -     cuu    c 

Deep sequencing

685 reads, 350 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr3: 32454988-32455129 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000666

Mature sequence osa-miR160d-5p

• Accession: MIMAT0000631
• Previous IDs: osa-miR160d
• Sequence: 8 - ugccuggcucccuguaugcca - 28
• Deep sequencing: 519 reads, 2 experiments
• Evidence: by similarity; MI0000190
• Database links:
  • RNAcentral:URS000055B49A_39947

Mature sequence osa-miR160d-3p

• Accession: MIMAT0022854
• Sequence: 119 - gcgugcgaggagccaagcaug - 139
• Deep sequencing: 166 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000005E7BD_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).