miRBase entry: osa-MIR160d

Stem-loop osa-MIR160d


Accession
MI0000666
Description
Oryza sativa osa-MIR160d precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
57 open access papers mention osa-MIR160d
(186 sentences)

Sequence

415 reads, 299 reads per million, 2 experiments
ggggauaUGCCUGGCUCCCUGUAUGCCAcucgcguagcugccaaacucaguugaaacaacugccuucucccggcgagauucaggcauuguguucguacguuuggcucuacugcggaugGCGUGCGAGGAGCCAAGCAUGacc
..((.(((((.(((((((.(((((((((.((((((((..(((((((...((((((((((.(((((((((.....))))...))))))))).)))).))))))))).)))).)))).))))))))).))))))).))))).))

Structure
gg  a     C       C         c    -    cu       uca  -    -    c     ---    c 
  gg uaUGC UGGCUCC UGUAUGCCA ucgc guag  gccaaac   gu ugaa acaa ugccu   ucuc c
  || ||||| ||||||| ||||||||| |||| ||||  |||||||   || |||| |||| |||||   |||| g
  cc GUACG ACCGAGG GCGUGCGgu ggcg cauc  cgguuug   ca gcuu uguu acgga   agag g
--  a     A       A         a    u    -u       ---  u    g    -     cuu    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr3: 32454988-32455129 [+]

Database links

Mature osa-miR160d-5p

Accession MIMAT0000631
Description Oryza sativa osa-miR160d-5p mature miRNA
Sequence 8 - UGCCUGGCUCCCUGUAUGCCA - 28
Evidence not_experimental
Database links

Mature osa-miR160d-3p

Accession MIMAT0022854
Description Oryza sativa osa-miR160d-3p mature miRNA
Sequence 119 - GCGUGCGAGGAGCCAAGCAUG - 139
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176