miRBase entry: osa-MIR166a

Stem-loop osa-MIR166a


Accession
MI0000670
Description
Oryza sativa osa-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
75 open access papers mention osa-MIR166a
(303 sentences)

Sequence

27827 reads, 19323 reads per million, 2 experiments
ugaagcuauuugcuucugaguGGAAUGUUGUCUGGUUCAAGGucucaugcaccuugcgguuuugaggaugauuugugcaagguuuuucauuccucucauccgugggaucUCGGACCAGGCUUCAUUCCCCucagagauagcuuca
((((((((((....((((((.((((((..(((((((((.((((((((((((...)))((....((((((((...............))).)))))....))))))))))).)))))))))..)))))).))))))))))))))))

Structure
          ugcu      u      UU         A         gcaccuugc  uuuu     -   uuugug 
ugaagcuauu    ucugag GGAAUG  GUCUGGUUC AGGucucau         gg    gagga uga      c
||||||||||    |||||| ||||||  ||||||||| |||||||||         ||    ||||| |||      a
acuucgauag    agacuC CCUUAC  CGGACCAGG Ucuagggug         cc    cuccu acu      a
          ----      C      UU         C         ---------  uacu     u   uuuugg 


Annotation confidence High
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Genome context
Chr10: 19987135-19987279 [+]

Database links

Mature osa-miR166a-3p

Accession MIMAT0000635
Description Oryza sativa osa-miR166a-3p mature miRNA
Sequence 110 - UCGGACCAGGCUUCAUUCCCC - 130
Evidence not_experimental
Database links

Mature osa-miR166a-5p

Accession MIMAT0022855
Description Oryza sativa osa-miR166a-5p mature miRNA
Sequence 22 - GGAAUGUUGUCUGGUUCAAGG - 42
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176