Stem-loop sequence osa-MIR166b

Accession

MI0000671 (change log)

Description

Oryza sativa miR166b stem-loop

Gene family

MIPF0000004; MIR166

Literature search

73 open access papers mention osa-MIR166b
(265 sentences)

Stem-loop

              cau    a        uu      cu     -    uuuua    -     -      -   --     cu     --c    uccuagcuu    u 
5' gggagccuuuu   uuug ggggaaug  gucugg  cgggg cuac     auuu cucuc ucuuuu gau  aucuu  uuucu   gauc         gauc u
   |||||||||||   |||| ||||||||  ||||||  ||||| ||||     |||| ||||| |||||| |||  |||||  |||||   ||||         ||||  
3' cccucgggaag   aaac ccccuuac  cggacc  gcucu gaug     uaga gagag agagaa cug  uagaa  aaaga   cuag         cuag u
              -ac    c        uu      ag     a    -ucug    u     u      a   ac     --     auu    cuaaacucu    u 

Deep sequencing

37136 reads, 2.44e+04 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr6: 30327084-30327289 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000671

Mature sequence osa-miR166b-5p

• Accession: MIMAT0022856
• Sequence: 22 - ggaauguugucuggcucgggg - 42
• Deep sequencing: 228 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00000A4AD2_39947

Mature sequence osa-miR166b-3p

• Accession: MIMAT0000636
• Previous IDs: osa-miR166b
• Sequence: 168 - ucggaccaggcuucauucccc - 188
• Deep sequencing: 36908 reads, 2 experiments
• Evidence: by similarity; MI0000201
• Database links:
  • RNAcentral:URS00003065B2_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).