Stem-loop osa-MIR166d

Accession

MI0000673

Description

Oryza sativa osa-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

73 open access papers mention osa-MIR166d
(268 sentences)

Sequence

27896 reads, 19377 reads per million, 2 experiments

gaagcuuuuucacuuugaggGGAAUGUUGUCUGGCUCGAGGugcauggagaaaccucugaucgaucagguuugaucuguagagacugaucUCGGACCAGGCUUCAUUCCCCucaaguaaagcucc
..((((((...((((.((((((((((..((((((.(((((((.((.((((....))))((((((......)))))).........))))))))).))))))..))))))))))))))))))))..

Structure

ga      uuc    u          UU      C       g  uggagaaaccucu      uc 
  agcuuu   acuu gaggGGAAUG  GUCUGG UCGAGGu ca             gaucga  a
  ||||||   |||| ||||||||||  |||||| ||||||| ||             ||||||   
  ucgaaa   ugaa cuCCCCUUAC  CGGACC GGCUcua gu             cuaguu  g
cc      ---    -          UU      A       -  ----cagagaugu      ug 

Annotation confidence High

Genome context

Chr2: 26130059-26130183 [+]

Mature osa-miR166d-3p

• Accession: MIMAT0000638
• Description: Oryza sativa osa-miR166d-3p mature miRNA
• Sequence: 91 - UCGGACCAGGCUUCAUUCCCC - 111
• Evidence: not_experimental

Mature osa-miR166d-5p

• Accession: MIMAT0022858
• Description: Oryza sativa osa-miR166d-5p mature miRNA
• Sequence: 21 - GGAAUGUUGUCUGGCUCGAGG - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176