Accession
MI0001046
Description
Oryza sativa
osa-MIR396a precursor miRNA
Gene family
MIPF0000047;
MIR396
Literature search
56 open access papers mention osa-MIR396a
(147 sentences)
(147 sentences)
Sequence
137
reads,
97
reads per million, 2 experiments
cuuugugaucUUCCACAGCUUUCUUGAACUGcacgcaugaugaauaaucccuuugguuaauugugaucuggucucugagagaucguaguuagacucgaucgguugcauuggcaucagagagagcaGUUCAAUAAAGCUGUGGGAAauugcagag
(((((((((.((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.(((...))))))))...(((....))))))))))..))))))))).)))))))))))).)))))))))
(((((((((.((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.(((...))))))))...(((....))))))))))..))))))))).)))))))))))).)))))))))
Structure
c C --------------------------------------------------------a -- g uaa
cuuugugau UUCCACAGCUUU UUGAACUGc cgca ugau aa u
||||||||| |||||||||||| ||||||||| |||| |||| ||
gagacguua AGGGUGUCGAAA AACUUGacg gugu auug uu c
A U agagagacuacgguuacguuggcuagcucagauugaugcuagagagucucuggucua ua g ucc
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].
Genome context
Chr2: 34280384-34280537 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR396a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR396a-5p
| Accession | MIMAT0000977 |
| Description | Oryza sativa osa-miR396a-5p mature miRNA |
| Sequence | 11 - UUCCACAGCUUUCUUGAACUG - 31 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR396a-3p
| Accession | MIMAT0022863 |
| Description | Oryza sativa osa-miR396a-3p mature miRNA |
| Sequence | 126 - GUUCAAUAAAGCUGUGGGAA - 145 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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