Stem-loop osa-MIR396b

Accession

MI0001047

Description

Oryza sativa osa-MIR396b precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

56 open access papers mention osa-MIR396b
(143 sentences)

Sequence

139 reads, 100 reads per million, 2 experiments

cuuuguggucUUCCACAGCUUUCUUGAACUGcaucuuugagagagauuagcaucccuauguguggauuuugcuugcacgagugugcaGUUCAAUAAAGCUGUGGGAAauuacagag
(((((((((.((((((((((((.((((((((((((((((((.((((((.((((......)))).)))))).))))...))).))))))))))).)))))))))))).)))))))))

Structure

         c            C           -   ---    a      a    cc 
cuuuguggu UUCCACAGCUUU UUGAACUGcau cuu   ugag gagauu gcau  c
||||||||| |||||||||||| ||||||||||| |||   |||| |||||| ||||   
gagacauua AGGGUGUCGAAA AACUUGacgug gag   guuc uuuuag ugug  u
         A            U           u   cac    g      g    ua 

Annotation confidence Not enough data

Comments

This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].

Genome context

Chr6: 3669649-3669764 [+]

Mature osa-miR396b-5p

• Accession: MIMAT0000978
• Description: Oryza sativa osa-miR396b-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: not_experimental

Mature osa-miR396b-3p

• Accession: MIMAT0022864
• Description: Oryza sativa osa-miR396b-3p mature miRNA
• Sequence: 88 - GUUCAAUAAAGCUGUGGGAA - 107
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176