miRBase entry: osa-MIR397a

Stem-loop osa-MIR397a


Accession
MI0001049
Description
Oryza sativa osa-MIR397a precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
39 open access papers mention osa-MIR397a
(211 sentences)

Sequence

511 reads, 361 reads per million, 2 experiments
aucaaaugcaUCAUUGAGUGCAGCGUUGAUGaacaacgguaaccgguccauguugaugcgcauuuggccggugaucugaucaucaucagcgcuucacucaaucaugcguuuggc
.((((((((((.((((((((.(((((((((((....(((..(((((((.((((......))))..)))))))...)))....))))))))))).)))))))).)))))))))).

Structure
a          C        C           acaa   -ua       -c    ug 
 ucaaaugcaU AUUGAGUG AGCGUUGAUGa    cgg   accgguc  augu  a
 |||||||||| |||||||| |||||||||||    |||   |||||||  ||||   
 gguuugcgua uaacucac ucgcgacuacu    guc   uggccgg  uacg  u
c          c        u           acua   uag       uu    cg 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR397 family of miRNAs, which are predicted to target mRNAs coding for laccases and beta-6 tubulin [1].

Genome context
Chr6: 28489785-28489898 [+]

Database links

Mature osa-miR397a

Accession MIMAT0000980
Description Oryza sativa osa-miR397a mature miRNA
Sequence 11 - UCAUUGAGUGCAGCGUUGAUG - 31
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435