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miRBase |
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Stem-loop sequence osa-MIR399d |
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Accession | MI0001056 (change log) | |||||
Description | Oryza sativa miR399d stem-loop | |||||
Gene family | MIPF0000015; MIR399 | |||||
Literature search |
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60 open access papers mention osa-MIR399d | |||||
Stem-loop |
a - c gcauucua uuuuguaauuguauaugcauccaagguauauacaguccggccauggugcuacauugcaaucauccauaugugauugcauuguguauauauauacau 5' aagacagu guagg cagcucuccu uggcaggu gguga g |||||||| ||||| |||||||||| |||||||| ||||| g 3' uucuguca cgucc guugagagga accguccg ccacu u g c a --gcaaaa uaaguuagcgauguaccgcuagcuaguuucgaucaucgucgaccauauauguauguacguguauugguuggcuauauacuaccagauaguuuccgg |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence osa-miR399d |
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Accession | MIMAT0000987 |
Sequence |
256 - ugccaaaggagaguugcccug - 276 |
Deep sequencing | 7 reads, 2 experiments |
Evidence | by similarity; MI0001020 |
Database links |
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References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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