miRBase entry: ath-MIR158b

Stem-loop ath-MIR158b


Accession
MI0001084
Description
Arabidopsis thaliana ath-MIR158b precursor miRNA
Gene family
MIPF0000294; MIR158

Literature search
12 open access papers mention ath-MIR158b
(29 sentences)

Sequence

aucucugugcuucuuugucuacacuuuuggaaaaggugaugauaucauugcuuuuCCCCAAAUGUAGACAAAGCAauaccgugau
(((.(.(((...(((((((((((..(((((.((((((((((....))))))))))..))))))))))))))))...))).).)))

Structure
   u u   cuu           cu     -a          a 
auc c gug   cuuugucuaca  uuugg  aaaggugaug u
||| | |||   |||||||||||  |||||  ||||||||||  
uag g cau   GAAACAGAUGU  AAACC  uuuucguuac a
   u c   aAC           --     CC          u 


Annotation confidence Not enough data
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Genome context
chr1: 20772218-20772302 [+]

Database links

Mature ath-miR158b

Accession MIMAT0001014
Description Arabidopsis thaliana ath-miR158b mature miRNA
Sequence 56 - CCCCAAAUGUAGACAAAGCA - 75
Evidence experimental
454 [2], Illumina [3]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799