Stem-loop ath-MIR158b

Accession

MI0001084

Description

Arabidopsis thaliana ath-MIR158b precursor miRNA MIR158

Gene
family

RF00845; MIR158

Literature search

12 open access papers mention ath-MIR158b
(29 sentences)

Sequence

aucucugugcuucuuugucuacacuuuuggaaaaggugaugauaucauugcuuuuCCCCAAAUGUAGACAAAGCAauaccgugau
(((.(.(((...(((((((((((..(((((.((((((((((....))))))))))..))))))))))))))))...))).).)))

Structure

   u u   cuu           cu     -a          a 
auc c gug   cuuugucuaca  uuugg  aaaggugaug u
||| | |||   |||||||||||  |||||  ||||||||||  
uag g cau   GAAACAGAUGU  AAACC  uuuucguuac a
   u c   aAC           --     CC          u 

Annotation confidence Not enough data

Genome context

chr1: 20772218-20772302 [+]

Mature ath-miR158b

• Accession: MIMAT0001014
• Description: Arabidopsis thaliana ath-miR158b mature miRNA
• Sequence: 56 - CCCCAAAUGUAGACAAAGCA - 75
• Evidence: experimental ; 454 [2], Illumina [3]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799