Stem-loop osa-MIR160e

Accession

MI0001100

Description

Oryza sativa osa-MIR160e precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

59 open access papers mention osa-MIR160e
(192 sentences)

Sequence

402 reads, 284 reads per million, 2 experiments

guaggggauaUGCCUGGCUCCCUGUAUGCCGcucgcauggcugccaacccaaugaacucgaucucguuguuggccgcugcguacgGCGUGCGAGGUGCCAAGCAUGgcccucuu
...((((.(((((.((((.((.(((((((((..((((..((.((((((..(((((........))))))))))).))))))..))))))))).)).)))).))))).))))...

Structure

gua    a     C    U  C         cu    ug  u      cc     acu 
   gggg uaUGC UGGC CC UGUAUGCCG  cgca  gc gccaac  aauga   c
   |||| ||||| |||| || |||||||||  ||||  || ||||||  |||||    
   uccc GUACG ACCG GG GCGUGCGgc  gcgu  cg cgguug  uugcu   g
uuc    g     A    U  A         au    --  c      --     cua 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR160 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

Chr7: 2216761-2216874 [-]

Mature osa-miR160e-5p

• Accession: MIMAT0001030
• Description: Oryza sativa osa-miR160e-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCG - 31
• Evidence: not_experimental

Mature osa-miR160e-3p

• Accession: MIMAT0022867
• Description: Oryza sativa osa-miR160e-3p mature miRNA
• Sequence: 86 - GCGUGCGAGGUGCCAAGCAUG - 106
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176