Stem-loop osa-MIR160f

Accession

MI0001101

Description

Oryza sativa osa-MIR160f precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

60 open access papers mention osa-MIR160f
(192 sentences)

Sequence

96 reads, 73 reads per million, 2 experiments

ggauuaacgcUGCCUGGCUCCCUGAAUGCCAuccgagaagcgugccgcuguggccggcugcuuccugguugGCAUUGAGGGAGUCAUGCAGGguuugcuc
.....(((.((((.(((((((((.(((((((.(((.((((((.(((((....).)))))))))).))).))))))).))))))))).)))).))).....

Structure

ggauu   g    C         G       u   a      u    - u 
     aac cUGC UGGCUCCCU AAUGCCA ccg gaagcg gccg c g
     ||| |||| ||||||||| ||||||| ||| |||||| |||| |  
     uug GACG ACUGAGGGA UUACGgu ggu cuucgu cggc g u
cucgu   G    U         G       u   c      -    c g 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR160 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

Chr8: 24396882-24396981 [+]

Mature osa-miR160f-5p

• Accession: MIMAT0001031
• Description: Oryza sativa osa-miR160f-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGAAUGCCA - 31
• Evidence: not_experimental

Mature osa-miR160f-3p

• Accession: MIMAT0022868
• Description: Oryza sativa osa-miR160f-3p mature miRNA
• Sequence: 72 - GCAUUGAGGGAGUCAUGCAGG - 92
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176