miRBase entry: osa-MIR168a

Stem-loop osa-MIR168a


Accession
MI0001115
Description
Oryza sativa osa-MIR168a precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
70 open access papers mention osa-MIR168a
(273 sentences)

Sequence

409964 reads, 282915 reads per million, 2 experiments
cgccucgggcUCGCUUGGUGCAGAUCGGGACccgccgccgccgcugccggggccgGAUCCCGCCUUGCACCAAGUGAAUcggagccg
((.(((.((.(((((((((((((..(((((.(((..(((.(((....))))))))).)))))..))))))))))))).)).))).))

Structure
  c   g  c             AU     C   cc   g   c 
cg cuc gg UCGCUUGGUGCAG  CGGGA ccg  gcc ccg u
|| ||| || |||||||||||||  ||||| |||  ||| |||  
gc gag cU AGUGAACCACGUU  GCCCU Ggc  cgg ggc g
  c   g  A             CC     A   --   -   c 


Annotation confidence High
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Comments
This sequence is a predicted paralogue of the previously identified miR168 family [1]. It is predicted to target mRNAs coding for the ARGONAUTE protein.

Genome context
Chr2: 1553154-1553240 [-]

Database links

Mature osa-miR168a-5p

Accession MIMAT0001045
Description Oryza sativa osa-miR168a-5p mature miRNA
Sequence 11 - UCGCUUGGUGCAGAUCGGGAC - 31
Evidence experimental
Illumina [2]
Database links

Mature osa-miR168a-3p

Accession MIMAT0015122
Description Oryza sativa osa-miR168a-3p mature miRNA
Sequence 56 - GAUCCCGCCUUGCACCAAGUGAAU - 79
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435