Stem-loop sequence osa-MIR168a

Accession

MI0001115 (change log)

Description

Oryza sativa miR168a stem-loop

Gene family

MIPF0000081; MIR168

Literature search

70 open access papers mention osa-MIR168a
(256 sentences)

Stem-loop

     c   g gc             au     c   cc   g   c 
5' cg cuc g  ucgcuuggugcag  cggga ccg  gcc ccg u
   || ||| |  |||||||||||||  ||||| |||  ||| |||  
3' gc gag c  agugaaccacguu  gcccu ggc  cgg ggc g
     c   g ua             cc     a   --   -   c 

Deep sequencing

433102 reads, 2.98e+05 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

This sequence is a predicted paralogue of the previously identified miR168 family [1]. It is predicted to target mRNAs coding for the ARGONAUTE protein.

Genome context

• Coordinates (MSU7): Chr2: 1553154-1553240 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001115

Mature sequence osa-miR168a-5p

• Accession: MIMAT0001045
• Previous IDs: osa-miR168a
• Sequence: 11 - ucgcuuggugcagaucgggac - 31
• Deep sequencing: 432603 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000010419E_39947

Mature sequence osa-miR168a-3p

• Accession: MIMAT0015122
• Sequence: 56 - gaucccgccuugcaccaagugaau - 79
• Deep sequencing: 499 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00001C9D79_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).