Stem-loop osa-MIR169f

Accession

MI0001121

Description

Oryza sativa osa-MIR169f precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

63 open access papers mention osa-MIR169f
(320 sentences)

Sequence

1201 reads, 845 reads per million, 2 experiments

gggccuuccaUGAGGACAAGAGCUGAUUCGGUAGCCAAGGAUGACUUGCCUAaugccuaugugcauguguuuauacgcugcucaucugcauuuugauuauccccugaucaguccugucgucaauuauauguguguguaguacucuguacucauacauauauaggcaugucuuccuuggcuauucggagcggcucuugucucucguggaaggcug
.((((((((((((((((((((((((.(((((((((((((((.(((.((((.(((((..(((.(((.((((....))))))).)))..)))))(((((((.....))))))).............((((((((((((.(((((...))))))))))))))))))))).))).)))))))))).))))).))))))))))).))))))))))))).

Structure

g             -           A     -          U   U    ---------------------------------------------------------------------U augccuaugugcaugugu 
 ggccuuccaUGAG GACAAGAGCUG UUCGG UAGCCAAGGA GAC UGCC                                                                      A                  u
 ||||||||||||| ||||||||||| ||||| |||||||||| ||| ||||                                                                      |                  u
 ucggaaggugcuc cuguucucggc aggcu aucgguuccu cug acgg                                                                      u                  a
g             u           g     u          u   u    auauauacauacucaugucucaugauguguguguauauuaacugcuguccugacuaguccccuauuaguu uacgucuacucgucgcau 

Annotation confidence Not enough data

Genome context

Chr2: 18558299-18558512 [-]

Mature osa-miR169f.1

• Accession: MIMAT0001051
• Description: Oryza sativa osa-miR169f.1 mature miRNA
• Sequence: 32 - UAGCCAAGGAUGACUUGCCUA - 52
• Evidence: not_experimental

Mature osa-miR169f.2

• Accession: MIMAT0020916
• Description: Oryza sativa osa-miR169f.2 mature miRNA
• Sequence: 11 - UGAGGACAAGAGCUGAUUCGG - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53