Accession
MI0001124
Description
Oryza sativa
osa-MIR169i precursor miRNA
Gene family
MIPF0000012;
MIR169_1
Literature search
61 open access papers mention osa-MIR169i
(324 sentences)
(324 sentences)
Sequence
1489
reads,
1053
reads per million, 2 experiments
ggaagagagcaaggcuugcaUGGUGAUAAGGGUGUAGCUCUGgUAGCCAAGGAUGACUUGCCUGuguccuuguguagaggaucauucagaaaaugagccuugaacugguucauaggcagucuccuuggcuagucUGAGUCGCUCUUAUCACUCAUGuuaggcuugcaucucguuga
....(((((((((.((.(((((((((((((((((..((((.((((((((((((.((((.(((((((..((.((...((((.(((((.....))))).))))..)).))..))))))))))))))))))))).)).)))))))))))))))).))))).)).))))).)))).....
....(((((((((.((.(((((((((((((((((..((((.((((((((((((.((((.(((((((..((.((...((((.(((((.....))))).))))..)).))..))))))))))))))))))))).)).)))))))))))))))).))))).)).))))).)))).....
Structure
-ggaa - g u - UA U - U U uc u gua a c
gaga gcaag cu gcaUG GUGAUAAGGGUG GCUC Gg UAGCCAAGGA GACU GCCUGug cu gu gagg ucauu a
|||| ||||| || ||||| |||||||||||| |||| || |||||||||| |||| ||||||| || || |||| ||||| g
cucu cguuc ga uGUAC CACUAUUCUCGC UGAG cu aucgguuccu cuga cggauac gg ca uucc aguaa a
aguug a g u U -- U g - - uu u -ag g a
Annotation confidence
High
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Genome context
Chr8: 26803116-26803291 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR169i
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR169i-5p.1
| Accession | MIMAT0001054 |
| Description | Oryza sativa osa-miR169i-5p.1 mature miRNA |
| Sequence | 44 - UAGCCAAGGAUGACUUGCCUG - 64 |
| Evidence | not_experimental |
Mature osa-miR169i-5p.2
| Accession | MIMAT0020917 |
| Description | Oryza sativa osa-miR169i-5p.2 mature miRNA |
| Sequence | 21 - UGGUGAUAAGGGUGUAGCUCUG - 42 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
Mature osa-miR169i-3p
| Accession | MIMAT0022876 |
| Description | Oryza sativa osa-miR169i-3p mature miRNA |
| Sequence | 135 - UGAGUCGCUCUUAUCACUCAUG - 156 |
| Evidence |
experimental
Illumina [3] |
| Database links |
|
References
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