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miRBase |
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Stem-loop sequence osa-MIR171d |
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Accession | MI0001135 (change log) | ||||
Description | Oryza sativa miR171d stem-loop | ||||
Gene family | MIPF0000030; MIR171_1 | ||||
Literature search |
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44 open access papers mention osa-MIR171d | ||||
Stem-loop |
uugua au c c ---------- u c g -ga g ga 5' gcu gauguuggc cggcuca ucaga ugga cau g ugca aga ugcau a ||| ||||||||| ||||||| ||||| |||| ||| | |||| ||| ||||| u 3' cga cuauaaccg gccgagu agucu accu gua u augu ucu acgua c uacca cu u u ucaaggucgu c - g gac g gu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors. |
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Genome context |
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Database links |
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Mature sequence osa-miR171d-5p |
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Accession | MIMAT0022878 |
Sequence |
13 - uguuggcccggcucacucaga - 33 |
Deep sequencing | 45 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Mature sequence osa-miR171d-3p |
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Accession | MIMAT0001065 |
Previous IDs | osa-miR171d |
Sequence |
105 - ugauugagccgugccaauauc - 125 |
Deep sequencing | 548 reads, 2 experiments |
Evidence | by similarity; MI0000214 |
Database links |
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References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"
PLoS Pathog. 7:e1002176(2011).
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