Stem-loop osa-MIR171e

Accession

MI0001136

Description

Oryza sativa osa-MIR171e precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

42 open access papers mention osa-MIR171e
(156 sentences)

Sequence

522 reads, 369 reads per million, 2 experiments

ugguagcuaugaUGUUGGCUCGGCUCACUCAGAcggcauuggcgugaugcaaagcaugcaugcgugcuugcuagcucacuuguguuucUGAUUGAGCCGUGCCAAUAUCuuagugcucu
.((((.(((.(((((((((.(((((((.(((((.(((((....((((.((..((((.(((....))).)))).))))))..)))))))))).))))))).))))))))).)))))))..

Structure

-u    g   u         U       C     c     uggc    u  aa    u   u 
  ggua cua gaUGUUGGC CGGCUCA UCAGA ggcau    guga gc  agca gca g
  |||| ||| ||||||||| ||||||| ||||| |||||    |||| ||  |||| |||  
  ucgu gau CUAUAACCG GCCGAGU AGUcu uugug    cacu cg  ucgu cgu c
uc    -   u         U       U     -     --uu    -  -a    u   g 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

Chr3: 1970487-1970605 [+]

Mature osa-miR171e-3p

• Accession: MIMAT0001066
• Description: Oryza sativa osa-miR171e-3p mature miRNA
• Sequence: 89 - UGAUUGAGCCGUGCCAAUAUC - 109
• Evidence: not_experimental

Mature osa-miR171e-5p

• Accession: MIMAT0022879
• Description: Oryza sativa osa-miR171e-5p mature miRNA
• Sequence: 13 - UGUUGGCUCGGCUCACUCAGA - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176