miRBase entry: osa-MIR171f

Stem-loop osa-MIR171f


Accession
MI0001137
Description
Oryza sativa osa-MIR171f precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
45 open access papers mention osa-MIR171f
(187 sentences)

Sequence

501 reads, 354 reads per million, 2 experiments
gggagagugcgaUGUUGGCAUGGUUCAAUCAAAccgggcaaacuuaugcacuagcuaagcaagaugcagggauaugcaguaugguuuuguuuggucUGAUUGAGCCGUGCCAAUAUCacaagcuugc
(.(((..((.(((((((((((((((((((((.((((((((((.((((((.((.((...)).)).((((......)))))))))).)))))))))).))))))))))))))))))))).))..))).)

Structure
 g   ag  c                     A          c      --------------a  a  u 
g gag  ug gaUGUUGGCAUGGUUCAAUCA Accgggcaaa uuaugc               cu gc  
| |||  || ||||||||||||||||||||| |||||||||| ||||||               || || a
c uuc  ac CUAUAACCGUGCCGAGUUAGU ugguuuguuu gguaug               ga cg  
 g   ga  a                     c          u      acguauagggacgua  a  a 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context
Chr3: 30027774-30027900 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR171f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR171f-3p

Accession MIMAT0001067
Description Oryza sativa osa-miR171f-3p mature miRNA
Sequence 97 - UGAUUGAGCCGUGCCAAUAUC - 117
Evidence not_experimental
Database links

Mature osa-miR171f-5p

Accession MIMAT0022880
Description Oryza sativa osa-miR171f-5p mature miRNA
Sequence 13 - UGUUGGCAUGGUUCAAUCAAA - 33
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176