Stem-loop osa-MIR166g

Accession

MI0001142

Description

Oryza sativa osa-MIR166g precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

70 open access papers mention osa-MIR166g
(267 sentences)

Sequence

27755 reads, 19256 reads per million, 2 experiments

agcauggugucuggAAUGGAGGCUGAUCCAAGAUCauugcuuggugcaaaauacuagggcauuguuguaagugccauuaguucuuuuuuguuuccgaguuuguuaucgaggaucUCGGACCAGGCUUCAUUCCUCacaccgugcu
((((((((((..(((((((((.(((.(((.(((((...((((((.((((((.(((((((((((......)))))).)))))....))))))..))))))...........))))).))).))).)))))))))..))))))))))

Structure

          cu         G   A   A     --------auu      -u      ---u     -      gu 
agcauggugu  ggAAUGGAG CUG UCC AGAUC           gcuugg  gcaaaa    acuag ggcauu  u
||||||||||  ||||||||| ||| ||| |||||           ||||||  ||||||    ||||| ||||||   
ucgugccaca  CCUUACUUC GAC AGG Ucuag           ugagcc  uguuuu    ugauu ccguga  g
          CU         G   C   C     gagcuauuguu      uu      uucu     a      au 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR166 family [1]. It is predicted to target mRNAs coding for HD-Zip transcription factors.

Genome context

Chr12: 18329367-18329511 [+]

Mature osa-miR166g-3p

• Accession: MIMAT0001072
• Description: Oryza sativa osa-miR166g-3p mature miRNA
• Sequence: 115 - UCGGACCAGGCUUCAUUCCUC - 135
• Evidence: not_experimental

Mature osa-miR166g-5p

• Accession: MIMAT0022881
• Description: Oryza sativa osa-miR166g-5p mature miRNA
• Sequence: 15 - AAUGGAGGCUGAUCCAAGAUC - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176