Accession
MI0001149
Description
Oryza sativa
osa-MIR408 precursor miRNA
Gene family
MIPF0000102;
MIR408
Literature search
48 open access papers mention osa-MIR408
(174 sentences)
(174 sentences)
Sequence
831
reads,
581
reads per million, 2 experiments
gggaguucugugauuggagaggagaggagaCAGGGAUGAGGCAGAGCAUGGgauggggcuaucaacagauguagauuauuccuugcacaagagaugaugaugagcugugaaugaguucugagagauggcugguguuguuguugcucccucccCUGCACUGCCUCUUCCCUGGCuccccugcacaccucucucucucucucucucucucugugu
(((((..........(((((((((((((((((((((.(((((((.(((.((((.(((((...((((((...(((((((((.(((....))).))))))...(((((.......)))))..........)))...))))))..))))).)))).))).))))))).))))))((......)).....)))).))))).))))))))))).....
(((((..........(((((((((((((((((((((.(((((((.(((.((((.(((((...((((((...(((((((((.(((....))).))))))...(((((.......)))))..........)))...))))))..))))).)))).))).))))))).))))))((......)).....)))).))))).))))))))))).....
Structure
----- uucugugauu - - --------------- U A U u uau aug auuauuccuugcacaagagaugauga
gggag ggagag gagag gaga CAGGGA GAGGCAG GCA GGga ggggc caacag uag u
||||| |||||| ||||| |||| |||||| ||||||| ||| |||| ||||| |||||| |||
cucuc ucucuc cucuc cucu GUCCCU CUCCGUC CGU cccu ccucg guuguu guc g
ugugu ---------- u u ccacacguccccuCG U A C c -uu gug gguagagagucuugaguaagugucga
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr1: 12301661-12301873 [+]
Database links
Mature osa-miR408-3p
| Accession | MIMAT0001079 |
| Description | Oryza sativa osa-miR408-3p mature miRNA |
| Sequence | 153 - CUGCACUGCCUCUUCCCUGGC - 173 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR408-5p
| Accession | MIMAT0022884 |
| Description | Oryza sativa osa-miR408-5p mature miRNA |
| Sequence | 31 - CAGGGAUGAGGCAGAGCAUGG - 51 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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