Stem-loop sequence gga-mir-125b-2

Accession

MI0001175 (change log)

Previous IDs

gga-mir-125b

Description

Gallus gallus miR-125b-2 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

27 open access papers mention gga-mir-125b-2
(64 sentences)

Stem-loop

   a  aga   uu     uc  ug   c   a        ----g   u 
5'  uc   cuu  ccuag  cc  aga ccu acuuguga     guu u
    ||   |||  |||||  ||  ||| ||| ||||||||     |||  
3'  ag   gag  ggauc  gg  ucu gga ugaacacu     cga g
   -  -gg   gc     ca  gu   c   c        aacaa   u 

Deep sequencing

659613 reads, 7.22e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 99051079-99051168 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• RNAcentral:URS000075AE1E_9031
• miRBase Tracker:MI0001175

Mature sequence gga-miR-125b-5p

• Accession: MIMAT0001105
• Sequence: 17 - ucccugagacccuaacuuguga - 38
• Deep sequencing: 1220049 reads, 5 experiments
• Evidence: experimental; Illumina [2]

Mature sequence gga-miR-125b-3p

• Accession: MIMAT0026493
• Sequence: 57 - acaagucaggcucuugggaccu - 78
• Deep sequencing: 49541 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004FCB5F_9031
• Predicted targets:
  • TargetScanVert:gga-miR-125b-3p
  • miRDB:gga-miR-125b-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).