miRBase entry: gga-mir-196-2

Stem-loop gga-mir-196-2


Accession
MI0001190
Description
Gallus gallus gga-mir-196-2 precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
6 open access papers mention gga-mir-196-2
(16 sentences)

Sequence

134454 reads, 1901 reads per million, 5 experiments
aacugcucugugguuUAGGUAGUUUCAUGUUGUUGGggcuccaccuuucucuCUACAGCACGAAACUGCCUUAAuuacuucaguugauaucauc
(((((....((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..))))).........

Structure
---------     cucu      U          A      U    cucc 
         aacug    gugguu AGGUAGUUUC UGUUGU GGgg    a
         |||||    |||||| |||||||||| |||||| ||||    c
         uugac    cauuAA UCCGUCAAAG ACGACA Cucu    c
cuacuauag     --uu      U          C      U    cuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 32707474-32707567 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-196-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-196-5p

Accession MIMAT0001121
Description Gallus gallus gga-miR-196-5p mature miRNA
Sequence 16 - UAGGUAGUUUCAUGUUGUUGG - 36
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature gga-miR-196-2-3p

Accession MIMAT0026504
Description Gallus gallus gga-miR-196-2-3p mature miRNA
Sequence 53 - CUACAGCACGAAACUGCCUUAA - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45