Stem-loop sequence gga-mir-217

Accession

MI0001201 (change log)

Description

Gallus gallus miR-217 stem-loop

Gene family

MIPF0000077; mir-217

Literature search

7 open access papers mention gga-mir-217
(12 sentences)

Stem-loop

   aaagucacugcaga   cuu     c c  a  c     c          u -   aau 
5'               guu   gaugu g ag ua ugcau aggaacugau g gau   a
                 |||   ||||| | || || ||||| |||||||||| | |||    
3'               caa   cuacg c uc gu acgua uccuugacua c cug   a
   -----------gaa   -au     a u  c  u     a          c a   acu 

Deep sequencing

1602 reads, 20 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr3: 315408-315514 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-217

• gga-mir-216c: chr3: 323485-323570 [+]
• gga-mir-216b: chr3: 323483-323571 [-]
• gga-mir-216a: chr3: 318076-318181 [-]
• gga-mir-217: chr3: 315408-315514 [-]

Database links

• EntrezGene:
• RNAcentral:URS000075A4C4_9031
• miRBase Tracker:MI0001201

Mature sequence gga-miR-217-5p

• Accession: MIMAT0001132
• Sequence: 32 - uacugcaucaggaacugauuggau - 55
• Deep sequencing: 1597 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000058F867_9031
• Predicted targets:
  • TargetScanVert:gga-miR-217-5p
  • miRDB:gga-miR-217-5p

Mature sequence gga-miR-217-3p

• Accession: MIMAT0026513
• Sequence: 68 - ccaucaguuccuaaugcauugcc - 90
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-217-3p
  • miRDB:gga-miR-217-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).