Stem-loop gga-mir-215

Accession

MI0001203

Description

Gallus gallus gga-mir-215 precursor miRNA

Gene family

MIPF0000063; mir-192

Literature search

11 open access papers mention gga-mir-215
(27 sentences)

Sequence

8047 reads, 140 reads per million, 5 experiments

ucaguaagaacugguguccaggaaaAUGACCUAUGAAUUGACAGACugcuuucaaaaugugCCUGUCAUUUCUAUAGGCCAAUAuucugugcacuuuuccuacuu
..((((.(((..(((((.(((((...((.((((((((.((((((...((...........)))))))).))).))))).))...))))).))))).))).)))).

Structure

uc    a   cu     c     aaA  A     -   U      ACu  uuuc 
  agua gaa  ggugu cagga   UG CCUAU GAA UGACAG   gc    a
  |||| |||  ||||| |||||   || ||||| ||| ||||||   ||    a
  ucau cuu  ucacg gucuu   AC GGAUA CUU ACUGUC   Cg    a
-u    c   -u     u     AUA  C     U   U      ---  ugua 

Annotation confidence Not enough data

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr3: 18823159-18823263 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-215

Mature gga-miR-215-5p

• Accession: MIMAT0001134
• Description: Gallus gallus gga-miR-215-5p mature miRNA
• Sequence: 26 - AUGACCUAUGAAUUGACAGAC - 46
• Evidence: experimental ; Illumina [2]

Mature gga-miR-215-3p

• Accession: MIMAT0026514
• Description: Gallus gallus gga-miR-215-3p mature miRNA
• Sequence: 62 - CCUGUCAUUUCUAUAGGCCAAUA - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45